2024
Zhang, B., H. Chen, L. Shi, R. Guo, Y. Wang, Y. Zheng, R. Bai, Y. Gao, B. Liu* and X. Zhang* (2024). "Nitroreductase-Based "Turn-On" Fluorescent Probe for Bacterial Identification with Visible Features." ACS Sens.
H. Ren#, H. Chen#, Y. Kang#, W. Liu, Y. Liu, F. Tao, S. Miao, Y. Zhang, Q. Liu, M. Dong, Y. Liu*, B. Liu* and P. Yang*, Chem. Sci., 2024, Non-fibril Amyloid Aggregation at the Air/Water Interface: Self-adaptive Pathway Resulting in a 2D Janus Nanofilm, DOI: 10.1039/D4SC00560K.
Fan, T. T., B. Liu, H. Y. Yao, X. R. Chen, H. Yang, S. R. Guo, B. Wu, X. Z. Li, X. Y. Li, M. Xun and H. L. Wang (2024). "Cathelicidin peptide analogues inhibit EV71 infection through blocking viral entry and uncoating." Plos Pathogens 20(1).
2023
Yang Y, Hu Z, Kang Y, Gao J, Chen H, Liu H, Wang Y, Liu B, 2023, Phage SPO1 Protein Gp49 Is a Novel RNA Binding Protein That Is Involved in Host Iron Metabolism., Int J Mol Sci, Vol: 24
Zhang M, Zhang K, Chen Z, Wang L, Wu L, Wang Y, Liu B*, Shi B*, 2023, Secretory expression of human thyroid stimulating hormone receptor A subunit in sf9 insect cell system, Journal of Xi'an Jiaotong University (Medical Sciences), Vol: 44, Pages: 409-414, ISSN: 1671-8259
Liu W, Bi J, Ren Y, Chen H, Zhang J, Wang T, Wang M, Zhang L, Zhao J, Wu Z, Lv Y, Liu B*, Wu R*, 2023, Targeting extracellular CIRP with an X-aptamer shows therapeutic potential in acute pancreatitis, ISCIENCE, Vol: 26
Yang L, Wang J, Lu S, Zhong Y, Xiong K, Liu X, Liu B, Wang X, Wang P and Le S. (2023) Temperature-dependent carrier state mediated by H-NS promotes the long-term coexistence of Y. pestis and a phage in soil. PLoS Pathog 19(6): e1011470. https://doi.org/10.1371/journal.ppat.1011470
Li L, Zhong Q, Zhao Y, Bao J, Liu B, Zhong Z, Wang J, Yang L, Zhang T, Cheng M, Wu N, Zhu T, Le S. 2023, First-in-human application of double-stranded RNA bacteriophage in the treatment of pulmonary Pseudomonas aeruginosa infection, MICROBIAL BIOTECHNOLOGY, ISSN: 1751-7915
2022
Wang X, Ji Y, Qiu C, Zhang H, Bi L, Xi H, Lei L, Liu B, Han W, Gu J, 2022, A phage cocktail combined with the enteric probiotic Lactobacillus reuteri ameliorated mouse colitis caused by S. typhimurium., Food Funct, Vol: 13, Pages: 8509-8523
Li Y, Zhu F, Li Yan, Pan S, Wang H, Yang Z, Yu J, Li T, Liu X, Wang Y, Ma X, Liu B, 2022, Bacteriophages allow selective depletion of gut bacteria to produce a Targeted-Bacterium-Depleted (TBD) mouse model. Cell Reports Methods https://doi.org/10.1016/j.crmeth.2022.100324
Guo, R.; Gao, J.; Hui, L.; Li, Y.; Liu, J.; Fu, Y.; Shi, L.; Wang, Y.; Liu, B. An Improved Method for Quick Quantification of Unsaturated Transferrin. Biosensors 2022, 12, 708. https://doi.org/10.3390/bios12090708
Zhang K, Li S, Wang Y, Wang Z, Mulvenna N, Yang H, Zhang P, Chen H, Li Y, Wang H, Gao Y, Wigneshweraraj S, Matthews S, Zhang K, Liu B, 2022, Bacteriophage protein PEIP is a potent Bacillus subtilis enolase inhibitor, Cell Reports. DOI:https://doi.org/10.1016/j.celrep.2022.111026
Zhang P, Zhao X, Wang Y, Du K, Wang Z, Yu J, Chang G, Matthews S, Wang H, Liu, B. 2022, Bacteriophage protein Gp46 is a cross-species inhibitor of nucleoid-associated HU proteins. PNAS. https://doi.org/10.1073/pnas.2116278119
Wang M, Wang C, Feng C, Guo W, Chen H, Liu B, Li E, Liu W, Taouil A, Ojima I, Hou P. Potent antitumor activity of novel taxoids in anaplastic thyroid cancer. Endocrine. 2022 Feb;75(2):465-477. doi: 10.1007/s12020-021-02880-1.
2021
Denghui Liu, Chi Xu, Wenjun He, Zhimeng Xu, Wenqi Fu Lei Zhang, Jie Yang, Zhihao Wang, Bing Liu, Guangdun Peng, Dali Han, Xiaolong Bai, Nan Qiao. (2021) AutoGenome: An AutoML Tool for Genomic Research. Artificial Intelligence in the Life Sciences, https://doi.org/10.1016/j.ailsci.2021.100017
Garnett, J. A., Palma, A. S., Liu, B. & Liu, Y. (2021) Editorial: Glycans as Players in Host-Microbe Interactions: A Structural Perspective. Frontiers in Molecular Biosciences 8, doi:10.3389/fmolb.2021.791765
Liu, B*., Li, S., Liu, Y., Chen, H., Hu, Z., Wang, Z., Zhao, Y., Zhang, L., Ma, B., Wang, H. et al. (2021) Bacteriophage Twort protein Gp168 is a beta-clamp inhibitor by occupying the DNA sliding channel. Nucleic Acids Res. https://doi.org/10.1093/nar/gkab875
Kaitao Zhao, Zunhui Ke, Hongbin Hu, Yahui Liu, Aixin Li, Rong Hua, Fangteng Guo, Junfeng Xiao, Yu Zhang, Ling Duan, Xin-fu Yan, Yonggui Gao, Bing Liu, Yuchen Xia, and Yan Li. (2021), Structural basis and function of the N-terminus of SARS-CoV-2 nonstructural protein 1, Microbiology Spectrum, DOI: 10.1128/Spectrum.00169-21
Kaining Zhang†, Xiaojiao Li†, Zhihao Wang†, Guanglin Li, Biyun Ma, Huan Chen, Na Li, Huaiyu Yang, Yawen Wang, Bing Liu* (2021). Systemic expression, purification and initial structural characterization of bacteriophage T4 proteins without known structure homologs, Frontiers in Microbiology, https://doi.org/10.3389/fmicb.2021.674415
Zhihao Wang†, Hongliang Wang†, Nancy Mulvenna, Maximo Sanz-Hernandez, Peipei Zhang, Yanqing Li, Jia Ma, Yawen Wang, Steve Matthews, and Sivaramesh Wigneshweraraj*, Bing Liu*. 2021 A bacteriophage DNA mimic protein employs a nonspecific strategy to inhibit the bacterial RNA polymerase. Frontiers in Microbiology, doi: 10.3389/fmicb.2021.692512
Wang Z, Zhao S, Li Y, Zhang K, Mo F, Zhang J, Hou Y, He L, Liu Z, Wang Y, Xu Y, Wang H, Buck M, Matthews SJ, Liu B*, 2021, RssB-mediated sigma(S) Activation is Regulated by a Two-Tier Mechanism via Phosphorylation and Adaptor Protein - IraD, Journal of Molecular Biology, Vol: 433, ISSN: 0022-2836
Li Y, Li G, Wang Z, Chen W, Wang H, Wang Y, Liu B*, 2021, Resonance assignments of the cytoplasmic domain of ECF sigma factor W pathway protein YsdB from Bacillus subtilis, BIOMOLECULAR NMR ASSIGNMENTS, ISSN: 1874-2718
2020
Xu C, Ke Z, Liu C, Wang Z, Liu D, Zhang L, Wang J, He W, Xu Z, Li Y, Yang Y, Huang Z, Lv P, Wang X, Han D, Li Y, Qiao N, Liu B*, 2020, Systemic In Silico Screening in Drug Discovery for Coronavirus Disease (COVID-19) with an Online Interactive Web Server, JOURNAL OF CHEMICAL INFORMATION AND MODELING, Vol: 60, Pages: 5735-5745, ISSN: 1549-9596 (Journal cover story- https://pubs.acs.org/toc/jcisd8/60/12)
Krishna A, Liu B, Peacock SJ, Wigneshweraraj S, 2020, The prevalence and implications of single-nucleotide polymorphisms in genes encoding 3 the RNA polymerase of clinical isolates of Staphylococcus aureus, MicrobiologyOpen, Vol: 9, Pages: 1-8, ISSN: 2045-8827
Yang Y, Ke Z, Wang Z, Li Y, Li Y, Wang Y, Liu B*, 2020, H-1, C-13 and (15) N NMR assignments of solubility tag protein Msyb of Escherichia coli, BIOMOLECULAR NMR ASSIGNMENTS, ISSN: 1874-2718
Wang Z, Liang Y, Liu H, Wang Y, Wang H, Liu B*, 2020, Resonance assignments of bacteriophage SPO1 Gp49 protein, BIOMOLECULAR NMR ASSIGNMENTS, Vol: 14, Pages: 111-114, ISSN: 1874-2718
2019
Zhang K, Wang Z, Chang G, Wang H, Wang Y, Liu B*, 2019, Resonance assignments of bacteriophage T4 Y04L protein, BIOMOLECULAR NMR ASSIGNMENTS, DOI: https://doi.org/10.1007/s12104-019-09919-5
Wang Z, Zhao S, Jiang S, Wang Y, Buck M, Matthews S, Liu B*, 2019, Resonance assignments of N-terminal receiver domain of sigma factor S regulator RssB from Escherichia coli, BIOMOLECULAR NMR ASSIGNMENTS, Vol: 13, Pages: 333-337, ISSN: 1874-2718
Zhu F, Guo R, Wang W, Ju Y, Wang Q, Ma Q, Sun Q, Fan Y, Xie Y, Yang Z, Jie Z, Zhao B, Xiao L, Yang L, Zhang T, Liu B, Guo L, He X, Chen Y, Chen C, Gao C, Xu X, Yang H, Wang J, Dang Y, Madsen L, Brix S, Kristiansen K, Jia H, Ma X, 2019, Transplantation of microbiota from drug-free patients with schizophrenia causes schizophrenia-like abnormal behaviors and dysregulated kynurenine metabolism in mice., Mol Psychiatry, DOI: 10.1038/s41380-019-0475-4
Zhang P, Wang Z, Zhao S, Wang Y, Matthews S, Liu B*, 2019, 1H, 13C and 15N NMR assignments of Bacillus subtilis bacteriophage SPO1 protein Gp46, BIOMOLECULAR NMR ASSIGNMENTS, DOI: 10.1007/s12104-019-09885-y
Zhao S, Zhang K, Jiang S, Liu Z , Wang Z, Wang Y, Liu B*, 2019, Resonance assignments of Sigma factor S binding protein Crl from Escherichia Coli, BIOMOLECULAR NMR ASSIGNMENTS, DOI: 10.1007/s12104-019-09881-2
2018
Darvill N, Dubois D, Rouse S, Hammoudi P, Blake T, Benjamin S, Liu B, Dominique S, Matthews S, 2018, Structural Basis of Phosphatidic Acid Sensing by APH in Apicomplexan Parasites, Structure, doi.org/10.1016/j.str.2018.05.001
Tabib-Salazar A#, Liu B#, Barker D, Burchell L, Qimron U, Matthews S*, Wigneshweraraj S*, 2018, A T7 phage factor required for managing RpoS in Escherichia coli, PNAS，doi.org/10.1073/pnas.1800429115
Liu B, Wang Z, Lan L, Yang Q, Zhang P, Shi L, Lang Y, Tabib-Salazar A, Wigneshweraraj S, Zhang J, Wang Y, Tang Y, Matthews S*, Zhang X*, 2018, A Rapid Colorimetric Method to Visualize Protein Interactions. Chemistry: A European Journal, DOI:10.1002/chem.201800401
Previous publications
Tabib-Salazar A#, Liu B#, Shadrin A, Mekler V, Xu Y, Severinov K, Matthews S*, Wigneshweraraj S*, 2017，Full shut-off of Escherichia coli RNA-polymerase by T7 phage requires a small phage-encoded DNA-binding protein, NUCLEIC ACIDS RESEARCH, 2017. Doi: 10.1093/nar/gkx370
Zhang P, Yang X, He Y, Chen Z, Liu B, Cota E, Yang G, Wang W, Zhang J, Lin R, 2017, Preparation, characterization and toxicity evaluation of amphotericin B loaded MPEG-PCL micelles and its application for buccal tablets , APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. DOI:10.1007/s00253-017-8463-6
Jønsson R#, Liu B#, Struve C, Yang Y, Jørgensen R, Xu Y, Jenssen H, Krogfelt KA, Matthews S, 2016, Structural and functional studies of Escherichia coli aggregative adherence fimbriae (AAF/V) reveal a deficiency in extracellular matrix binding., Biochim Biophys Acta
Liang X#, Liu B#, Zhu F#, Scannapieco FA, Haase EM, Matthews S, Wu H, 2016, A distinct sortase SrtB anchors and processes a streptococcal adhesin AbpA with a novel structural property, Scientific Reports, Vol: 6, ISSN: 2045-2322
Huynh M-H#, Liu B#, Henry M, Liew L, Matthews SJ, Carruthers VB, 2015, Structural Basis of Toxoplasma gondii MIC2-associated Protein Interaction with MIC2, JOURNAL OF BIOLOGICAL CHEMISTRY, Vol: 290, Pages: 1432-1441, ISSN: 0021-9258
Liu B, Zhu F, Wu H, Matthews S, 2015, NMR assignment of the amylase-binding protein A from Streptococcus parasanguinis, BIOMOLECULAR NMR ASSIGNMENTS, Vol: 9, Pages: 173-175, ISSN: 1874-2718
Liu B#, Shadrin A#, Sheppard C, Mekler V, Xu Y, Severinov K, Matthews S, Wigneshweraraj S, 2014, A bacteriophage transcription regulator inhibits bacterial transcription initiation by Sigma-factor displacement, NUCLEIC ACIDS RESEARCH, Vol: 42, Pages: 4294-4305, ISSN: 0305-1048
Liu B#, Shadrin A#, Sheppard C, Mekler V, Xu Y, Severinov K, Matthews S, Wigneshweraraj S, 2014, The sabotage of the bacterial transcription machinery by a small bacteriophage protein., Bacteriophage, Vol: 4, ISSN: 2159-7073
Berry AA, Yang Y, Pakharukova N, Garnett JA, Lee W-C, Cota E, Marchant J, Roy S, Tuittila M, Liu B, Inman KG, Ruiz-Perez F, Mandomando I, Nataro JP, Zavialov AV, Matthews S, 2014, Structural Insight into Host Recognition by Aggregative Adherence Fimbriae of Enteroaggregative Escherichia coli, PLOS PATHOGENS, Vol: 10, ISSN: 1553-7366
Wang K, Liu T, Lin R, Liu B, Yang G, Bu X, Wang W, Zhang P, Zhou L, Zhang J, 2014, Preparation and in vitro release of buccal tablets of naringenin-loaded MPEG-PCL nanoparticles, RSC ADVANCES, Vol: 4, Pages: 33672-33679, ISSN: 2046-2069
Tabib-Salazar A, Liu B, Doughty P, Lewis RA, Ghosh S, Parsy M-L, Simpson PJ, O'Dwyer K, Matthews SJ, Paget MS, 2013, The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase, NUCLEIC ACIDS RESEARCH, Vol: 41, Pages: 5679-5691, ISSN: 0305-1048
Muniz-Feliciano L, Van Grol J, Portillo J-AC, Liew L, Liu B, Carlin CR, Carruthers VB, Matthews S, Subauste CS, 2013, Toxoplasma gondii-Induced Activation of EGFR Prevents Autophagy Protein-Mediated Killing of the Parasite, PLOS PATHOGENS, Vol: 9, ISSN: 1553-7374
Liu B#, Garnett JA#, Lee W-C, Lin J, Salgado P, Taylor J, Xu Y, Lambert S, Cota E, Matthews S., 2012, Promoting crystallisation of the Salmonella enteritidis fimbriae 14 pilin SefD using deuterium oxide, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, Vol: 421, Pages: 208-213, ISSN: 0006-291X
James E, Liu M, Sheppard C, Mekler V, Camara B, Liu B, Simpson P, Cota E, Severinov K, Matthews S, Wigneshweraraj S., 2012, Structural and Mechanistic Basis for the Inhibition of Escherichia coli RNA Polymerase by T7 Gp2, MOLECULAR CELL, Vol: 47, Pages: 755-766, ISSN: 1097-2765
Camara B, Liu M, Reynolds J, Shadrin A, Liu B, Kwok K, Simpson P, Weinzierl R, Severinov K, Cota E, Matthews S, Wigneshweraraj SR, 2010, T7 phage protein Gp2 inhibits the Escherichia coli RNA polymerase by antagonizing stable DNA strand separation near the transcription start site, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol: 107, Pages: 2247-2252, ISSN: 0027-8424
Liu B, Sawmynaden K, Marchant J, Simpson P, Matthews S., 2009, Complete resonance assignments for the MIC2 associated protein from Toxoplasma gondii, BIOMOLECULAR NMR ASSIGNMENTS, Vol: 3, Pages: 81-83, ISSN: 1874-2718
Saouros S, Blumenschein TMA, Sawmynaden K, Marchant J, Koutroukides T, Liu B, Simpson P, Carpenter EP, Matthews SJ, 2007, High-level bacterial expression and purification of apicomplexan micronemal proteins for structural studies, PROTEIN AND PEPTIDE LETTERS, Vol: 14, Pages: 411-415, ISSN: 0929-8665
