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2024 [67] Feng Chen, Xinyin Li, Min Bai, and Yongxi Zhao*. Visualizing epigenetic modifications and their spatial proximities in single cells using three DNA-encoded amplifying FISH imaging strategies: BEA-FISH, PPDA-FISH and Cell-TALKING. Nature Protocols, 2024. (IF 13.1)
[66] Yuanyuan Luo, Na Wu*, Liqiong Niu, Pengyan Hao, Xiaoya Sun, Feng Chen, and Yongxi Zhao*. Ionic Strength-Mediated “DNA Corona Defects” for Efficient Arrangement of Single-Walled Carbon Nanotubes. Advanced Science, 2024.(IF 14.3)
2023 [65] Zhenglian Li, Yanguan Lv, Xiaoman Duan, Biwu Liu,* and Yongxi Zhao*. Highly Uniform DNA Monolayers Generated by Freezing-Directed Assembly on Gold Surfaces Enable Robust Electrochemical Sensing in Whole Blood. Angewandte Chemie International Edition, 2023, doi.org/10.1002/ange.202312975 (IF 16.6) Highlighted by 西安交通大学新闻网 http://news.xjtu.edu.cn/info/1004/201736.htm
[64] Huan Liu,† Lang Nan,† Feng Chen, Yue Zhao, and Yongxi Zhao*. Functions and applications of artificial intelligence in droplet microfluidics. Lab on a Chip, 2023, 23, 2497-2513 (IF 7.517)
[63] Jin Zhang, Jing Xue, Ningfeng Luo, Feng Chen, Badong Chen* and Yongxi Zhao*. Microwell array chip-based single-cell analysis. Lab on a Chip, 2023, 23, 1066-1079 (IF 7.517)
2022 [62] Xiaowen Cao, Feng Chen*, Jing Xue, Yue Zhao, Min Bai and Yongxi Zhao*. Hierarchical DNA branch assembly-encoded fluorescent nanoladders for single-cell transcripts imaging. Nucleic Acids Research, 2022, 51, e13 (IF 19.160) Highlighted by 西安交通大学新闻网 http://news.xjtu.edu.cn/info/1004/190914.htm
[61] FengChen#, Jing Xue#, Min Bai, Chunhai Fan, and Yongxi Zhao*. Lighting Up Nucleic Acid Modifications in Single Cells with DNA-Encoded Amplification. Accounts of Chemical Research, 2022, 55, 2248-2259 (IF 24.466) Highlighted by 西安交通大学新闻网 http://news.xjtu.edu.cn/info/1004/185976.htm
[60] Fengjiao Zhao#, FengChen#, Huahang Yu, Siyue Fan, Min Bai, Jing Xue, Yue Zhao, Xiaolei Zuo, Chunhai Fan, Yongxi Zhao*. CRISPR/Cas system-guided plasmid mutagenesis without sequence restriction. Fundamental Research, DOI: https://doi.org/10.1016/j.fmre.2022.06.017
[59] Yue Zhao, Xiaoxing Fang, Huahang Yu, Youlan Fu, and Yongxi Zhao*. Universal Exponential Amplification Confers Multilocus Detection of Mutation-Prone Virus. Analytical Chemistry, 2022, 94, 927-933 (IF 8.008)
[58] Xiaoxing Fang#, Yue Zhao#, Min Bai, Feng Chen, Biwu Liu and Yongxi Zhao*. Hydrogel-compartmentalized heterogeneous amplification for viral digital genotyping. Sensors and Actuators B: Chemical, 2022, 356, 131339 (IF 9.221)
[57] Li Su#, Fengjiao Zhao#, Huahang Yu, Min Bai, Jing Xue, Xiaowen Cao, Feng Chen and Yongxi Zhao*. A bifunctional chemical signature enabling RNA 4-thiouridine enrichment sequencing with single-base resolution. Chemical Communications, 2022, 58, 1322-1325 (IF 6.065)
2021 [56] Li Su, Feng Chen, Huahang Yu, Hao Yan, Fengjiao Zhao, Chunhai Fan, and Yongxi Zhao*. Addition–Elimination Mechanism-Activated Nucleotide Transition Sequencing for RNA Dynamics Profiling. Analytical Chemistry, 2021, 93, 13974-13980 (IF 8.008)
[55] Min Bai, Xiaowen Cao, Feng Chen, Jing Xue, Yue Zhao, and Yongxi Zhao*. Bioorthogonal Chemical Signature Enabling Amplified Visualization of Cellular Oxidative Thymines. Analytical Chemistry, 2021, 93, 10495–10501 (IF 8.008)
[54] Feng Chen#, Min Bai#, Xiaowen Cao, Jing Xue, Yue Zhao, Na Wu, Lei Wang, Dexin Zhang, and Yongxi Zhao*. Cellular macromolecules-tethered DNA walking indexing to explore nanoenvironments of chromatin modifications. Nature Communications, 2021, 12, 1965. (IF 17.694) Highlighted by Tang, L. Walking through chromatin modifications. Nature Methods, 2021, 18: 446. 西安交通大学新闻网 http://news.xjtu.edu.cn/info/1004/131703.htm
[53] Jing Xue, Feng Chen, Min Bai, Xiaowen Cao,Wenhao Fu, Jin Zhang, and Yongxi Zhao*. Aptamer-Functionalized Microdevices for Bioanalysis. ACS Applied Materials & Interfaces, 2021, 13, 8, 9402–9411 (IF 10.383)
[52] Jing Xue#, Feng Chen#, Li Su#, Xiaowen Cao, Min Bai, Yue Zhao, Chunhai Fan, and Yongxi Zhao*. Pairwise Proximity-differentiated Visualization of Single-cell DNA Epigenetic Marks. Angewandte Chemie International Edition, 2021, 60, 3428–3432 (IF 16.823) Highlighted by 西安交通大学新闻网 http://news.xjtu.edu.cn/info/1004/124457.htm#10006-weixin-1-52626-6b3bffd01fdde4900130bc5a2751b6d1
[51] Yongxi Zhao, Xiaolei Zuo, Qian Li, Feng Chen, Yan-Ru Chen, Jinqi Deng, Da Han, Changlong Hao, Fujian Huang, Yanyi Huang, Guoliang Ke, Hua Kuang, Fan Li, Jiang Li, Min Li, Na Li, Zhenyu Lin, Dingbin Liu, Juewen Liu, Libing Liu, Xiaoguo Liu, Chunhua Lu, Fang Luo, Xiuhai Mao, Jiashu Sun, Bo Tang, Fei Wang, Jianbin Wang, Lihua Wang, Shu Wang, Lingling Wu, Zai-Sheng Wu, Fan Xia, Chuanlai Xu, Yang Yang, Bi-Feng Yuan, Quan Yuan, Chao Zhang, Zhi Zhu, Chaoyong Yang *, Xiao-Bing Zhang *, Huanghao Yang *, Weihong Tan *, Chunhai Fan*. Nucleic Acids Analysis. SCIENCE CHINA Chemistry, 2021, 64(2), 171-203 (IF 10.138)
2020 [50] Min Bai, Xiaowen Cao, Wei Huang, Feng Chen, Yue Zhao, Jing Xue, Youjun Li, Yilong Cheng, Lei Zhang, and Yongxi Zhao*. Visualizing Newly Synthesized RNA by Bioorthogonal Labeling-primed DNA Amplification. Analytical Chemistry, 2020, 92, 8444-8449 (IF 8.008)
[49] Min Bai#, Feng Chen#, Xiaowen Cao, Yue Zhao, Jing Xue, Xu Yu, Chunhai Fan, and Yongxi Zhao*. Intracellular Entropy-driven Multi-bit DNA Computing for Tumor Progression Discrimination. Angewandte Chemie International Edition, 2020, 59, 13267–13272 (IF 16.823) Highlighted by 国家自然科学基金委员会基金成果快讯http://www.nsfc.gov.cn/csc/20340/20343/53227/index.html 西安交通大学新闻网http://news.xjtu.edu.cn/info/1004/134653.htm [48] Na Wu and Yongxi Zhao*. DNA Nanostructures as Drug Carriers for Cellular Delivery. Chemical Research in Chinese Universities, 2020, 36 (2): 177-184 (IF 2.726)
[47] Feng Chen#, Jing Xue#, Jin Zhang, Min Bai, Xu Yu, Chunhai Fan and Yongxi Zhao*. Differentiated Visualization of Single-Cell 5-Hydroxymethylpyrimidines with Microfluidic Hydrogel Encoding. Journal of the American Chemical Society, 2020, 142, 6, 2889-2896 (IF 16.383) Highlighted by 西安交通大学新闻网http://news.xjtu.edu.cn/content.jsp?urltype=news.NewsContentUrl&wbtreeid=1050&wbnewsid=129945； 科技日报http://digitalpaper.stdaily.com/http_www.kjrb.com/kjrb/html/2020-03/16/content_441516.htm?div=-1。
2019 [46] Feng Chen#, Min Bai#, Xiaowen Cao, Yue Zhao, Jing Xue, Yongxi Zhao*. Click-encoded rolling FISH for visualizing single-cell RNA polyadenylation and structures. Nucleic Acids Research, 2019, 47(22): e145-e145 (IF 19.160)
[45] Yue Zhao, Xiaoxing Fang, Feng Chen, Min Bai, Chunhai Fan, Yongxi Zhao*. Locus-patterned sequence oriented enrichment for multidimensional gene analysis. Chemical Science, 2019, 10, 8421-8427(IF 9.969)
[44] Yu Xu, Na Wu, Feng Chen, Jing Wei, Yongxi Zhao*. Engineering Microfluidic chip for Circulating Tumor Cells: From Enrichment, Release to Single Cell Analysis. Trends in Analytical Chemistry, 2019，117，27-38 (IF 14.908)
[43] Jing Xue#, Feng Chen#, Min Bai, Xiaowen Cao, Ping Huang, and Yongxi Zhao*. All-in-one Synchronized DNA Nanodevices Facilitating Multiplexed Cell Imaging. Analytical Chemistry, 2019, 91, 4696-4701 (IF 8.008)
[42] Feng Chen#, Jing Xue#, Min Bai, Jing Qin, Yongxi Zhao*. Programming in situ accelerated DNA walkers in diffusion-limited microenvironments. Chemical Science, 2019, 10, 3103-3109 (IF 9.969)
2018 [41] Na Wu, Feng Chen, Yue Zhao, Yu Xu, Jing Wei and Yongxi Zhao*. Functional and Biomimetic DNA Nanostructures on Lipid Membranes. Langmuir, 2018, 34(49), 14721-14730 (IF 4.331)
[40] Dongzhen Chen, Xiaodong Zhu, Jian Huang, Gen Wang, Yue Zhao, Feng Chen, Jing Wei, Zhongxiao Song, and Yongxi Zhao*. Polydopamine @ Gold Nanowaxberry Enabling Improved SERS Sensing of Pesticides, Pollutants and Explosives in Complex Samples. Analytical Chemistry, 2018, 90, 9048−9054(IF 8.008)
[39] Jing Wei#, Gen Wang#, Feng Chen#, Min Bai, Yan Liang, Huanting Wang, Dongyuan Zhao, Yongxi Zhao*. Sol-gel Synthesis of Metal-Phenolic Coordination Spheres and Their Derived Carbon Composites. Angewandte Chemie International Edition, 2018, 57, 9838 –9843 (IF 16.823) [38] Feng Chen#, Min Bai#, Yue Zhao, Ke Cao, Xiaowen Cao, Yongxi Zhao*. MnO2 Nanosheet-Powered Janus Protection DNA Nanomachines Supporting Robust RNA Imagings. Analytical Chemistry, 2018, 90(3): 2271-2276(IF 8.008)
[37] Yue Zhao, Feng Chen, Jing Qin, Jing Wei, Wenhua Wu and Yongxi Zhao*.Engineered Janus probes modulate nucleic acid amplification to expand the dynamic range for direct detection of viral genomes in one microliter crude serum samples
[36] Min Bai, Xiaowen Cao, Feng Chen, Yue Zhao, Yongxi Zhao*. A Förster Resonance Energy Transfer Ratiometric Probe Based on Quantum Dot-Cresyl Violet for Imaging Hydrogen Sulfide in Living Cells. Chinese Journal of Analytical Chemistry, 2018, 46(1)：39-47 (IF 1.193)
[35] Feng Chen#, Min Bai#, Ke Cao, Yue Zhao, Xiaowen Cao, Jing Wei, Na Wu, Jiang Li, Lihua Wang, Chunhai Fan, and Yongxi Zhao* .Programming Enzyme-Initiated Autonomous DNAzyme Nanodevices in Living Cells. ACS Nano. 2017, 11：11908-11914 (IF 18.027)
[34] Feng Chen, Min Bai, Ke Cao, Yue Zhao, Jing Wei, Yongxi Zhao*. Fabricating MnO2 Nanozymes as Intracellular Catalytic DNA Circuit Generators for Versatile Imaging of Base-Excision Repair in Living Cell. Advanced Functional Materials. 2017, 27, 1702748 (IF 19.924)
[33] Feng Chen#, Xuyao Wang#, Xiaowen Cao , Yongxi Zhao*. Accurate Electrochemistry Analysis of Circulation Methylated DNA from Clinical Plasma Based on Paired-End Tagging and Amplifications. Analytical Chemistry, 2017, 89: 10468-10473. (IF 8.008)
[32] Jing Xue, Feng Chen, Min Bai, Xu Yu, Jing Wei, Ping Huang, Yongxi Zhao*. DNA-Mediated Assembly of Gold Nanoparticles and Its Applications in Bioanalysis. ChemNanoMat, 2017, 3: 725-735.(IF 3.820)
[31] Xuyao Wang#, Feng Chen#, Dexin Zhang, Yue Zhao, Jing Wei, Lihua Wang, Shiping Song, Chunhai Fan, Yongxi Zhao*. Single copy-sensitive electrochemical assay for circulating methylated DNA in clinical samples with ultrahigh specificity based on a sequential discrimination-amplification strategy. Chemical Science, 2017, 8: 4764-4770. (IF 9.969)
[30] Jing Wei, Yaoxin Hu, Yan Liang, Biao Kong, Zhanfeng Zheng, Jin Zhang, San Ping Jiang, Yongxi Zhao*, Huanting Wang*. Graphene Oxide/Core-shell Structured Metal-Organic Frameworks Nano-sandwiches and Their Derived Cobalt/N-doped Carbon Nanosheets for Oxygen Reduction Reaction. Journal of Materials Chemistry A, 2017, 5: 10182-10189. (IF 14.511)
[29] Jian Huang#, Dayan Ma#, Feng Chen, Dongzhen Chen, Min Bai, Kewei Xu, Yongxi Zhao* . Green in Situ Synthesis of Clean 3D Chestnut-Like Ag/WO3-x Nanostructures for Highly Efficient, Recyclable and Sensitive SERS Sensing. ACS Applied Materials & Interfaces, 2017, 9: 7436-7446. (IF 10.383)
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2016 年 [28]Yue Zhao, Huaqing Liu, Feng Chen, Min Bai, Yongxi Zhao*. Fidelity quantification of mercury(II) ion via circumventing biothiols-induced sequestration in enzymatic amplification system. RSC Advances, 2016, 6: 80296-80301. (IF 4.036)
[27]Yue Zhao, Huaqing Liu, Feng Chen, Min Bai, Junwu Zhao*,Yongxi Zhao*. Trifunctional Molecular Beacon-Mediated Quadratic Amplification for Highly Sensitive and Rapid Detection of Mercury(II) Ion with Tunable Dynamic Range. Biosensors and Bioelectronics, 2016, 86: 892-898. (IF 12.545)
[26]Dongzhen Chen, Zhongxiao Song, Feng Chen, Jian Huang, Jing Wei, Yongxi Zhao*. Simply Controllable Growth of Single Crystal Plasmonic Au-Ag Nano-spines with Anisotropic Multiple Site for Highly Sensitive and Uniform Surface-Enhanced Raman Scattering Sensing. RSC Advances, 2016, 6: 66056-66065. (IF 4.036) [25]Feng Chen#, Manli Lin#, Yue Zhao, Yongxi Zhao*. Catalase-functionalized SiO2 nanoparticles mediate growth of gold nanoparticles for plasmonic biosensing of attomolar microRNA with the naked eye. RSC Advances, 2016, 6: 15709-15715. (IF 4.036)
2015年 |
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[24]Feng Chen, Dexin Zhang, Qing Zhang, Xiaolei Zuo, Chunhai Fan, Yongxi Zhao*. Zero-background helicase-dependent amplification and its application to reliable assay of telomerase activity in cancer cell by eliminating primer-dimer artifacts. ChemBioChem, 2016, 17: 1171-1176. (IF 3.461)
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[23]Yongxi Zhao*, Feng Chen, Qian Li, Lihua Wang, Chunhai Fan*.Isothermal amplification of nucleic acids.Chemical Reviews, 2015 , 115: 12491-12545. (IF 72.087)
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[22]Jian Huang#, Dayan Ma#, Feng Chen, Min Bai, Kewei Xu,Yongxi Zhao*. Ag nanoparticles decorated cactus-like Ag dendrites/Si nanoneedles as highly efficient 3D SERS substrates toward sensitive sensing. Analytical Chemistry, 2015, 87: 10527-10534. (IF 8.008)
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[21]Feng Chen, Chunhai Fan,Yongxi Zhao*. Inhibitory impact of 3′-terminal 2′-O-methylated small silencing RNA on target-primed polymerization and unbiased amplified quantification of the RNA in arabidopsis thaliana. Analytical Chemistry, 2015, 87: 8758-8764.(IF 8.008)
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[20]Feng Chen,Yue Zhao,Chunhai Fan,Yongxi Zhao*. Mismatch extension of DNA polymerases and high-accuracy single nucleotide polymorphism diagnostics by gold nanoparticle-improved isothermal amplification. Analytical Chemistry, 2015, 87: 8718-8723.(IF 8.008)
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[19]Haobin Chen, Kaiwen Chang, Xiaoju Men, Kai Sun, Xiaofeng Fang, Chi Ma, Yongxi Zhao, Shengyan Yin, Weiping Qin, Changfeng Wu*. Covalent patterning and rapid visualization of latent fingerprints with photo-cross-linkable semiconductor polymer dots. ACS Applied Materials & Interfaces, 2015,7: 14477-14484.(IF 10.383)
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[18]Jian Huang, Feng Chen, Qing Zhang, Yonghua Zhan, Dayan Ma*, Kewei Xu*, Yongxi Zhao*. 3D silver nanoparticles decorated zinc oxide/silicon heterostructured nanomace arrays as high-performance surface-enhanced raman scattering substrates. ACS Applied Materials & Interfaces, 2015,7: 5725-5735.(IF 10.383)
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| 2014年 | |||
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[17]Yongxi Zhao*, Feng Chen, Qing Zhang, Yue Zhao, Xiaolei Zuo, Chunhai Fan*. Polymerase/nicking enzyme synergetic isothermal quadratic DNA machine and its application for one-step amplified biosensing of lead (II) ions at femtomole level and DNA methyltransferase. NPG Asia Materials, 2014, 6: e131.(IF 10.761)
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[16]Qing Zhang#, Feng Chen#, Feng Xu, Yongxi Zhao*, Chunhai Fan. Target-triggered three-way junction structure and polymerase/nicking enzyme synergetic isothermal quadratic DNA machine for highly specific, one-step, and rapid microRNA detection at attomolar level. Analytical Chemistry,2014, 86 (16):8098-8105.(IF 8.008)
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[15]Yongxi Zhao*, Feng Chen, Manli Lin, Chunhai Fan*. A methylation-blocked cascade amplification strategy for label-free colorimetric detection of DNA methyltransferase activity. Biosensors and Bioelectronics,2014,54:565-570.(IF 12.545)
[14]Yongxi Zhao*, Feng Chen, Yayan Wu, Yanhua Dong, Chunhai Fan. Highly sensitive fluorescence assay of DNA methyltransferase activity via methylation-sensitive cleavage coupled with nicking enzyme-assisted signal amplification. Biosensors and Bioelectronics, 2013,42:56-61. (IF 12.545)
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2013年 |
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[13]Yongxi Zhao*, Lin Qi, Feng Chen, Yue Zhao, Chunhai Fan. Highly sensitive detection of telomerase activity in tumor cells by cascade isothermal signal amplification based on three-way junction and base-stacking hybridization. Biosensors and Bioelectronics, 2013,41:764-770.(IF 12.545)
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[12]Feng Chen, Yongxi Zhao*, Lin Qi, Chunhai Fan. One-step highly sensitive florescence detection of T4 polynucleotide kinase activity and biological small molecules by ligation-nicking coupled reaction-mediated signal amplification. Biosensors and Bioelectronics, 2013,47:218-224. (IF 12.545)
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[11]Feng Chen, Yongxi Zhao*. Methylation-blocked enzymatic recycling amplification for highly sensitive fluorescence sensing of DNA methyltransferase activity. Analyst,2013,138:284-289.(IF 5.227)
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[10]Junyu Zhang, Qian Cao, Shaowu Li, Xiaoyun Lu, Yongxi Zhao, Jisong Guan, Jinchun Chen, Qiong Wu, Guoqiang Chen. 3-Hydroxybutyrate methyl ester as a potential drug against Alzheimer's disease via mitochondria protection mechanism. Biomaterials, 2013,30:7552-7562. (IF 15.304)
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| 2012年 | |||
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[9]Yongxi Zhao*, Lin Qi,Feng Chen,Yanhua Dong, Yu Kong,Yayan Wu, Chunhai Fan*. Ultrasensitive and selective detection of nicotinamide adenine dinucleotide by target-triggered ligation-rolling circle amplification. Chemical Communications,2012, 48:3354-3356. (IF 6.065)
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[8]Lin Qi, Yongxi Zhao*, Hui Yuan, Kai Bai,Yue Zhao, Feng Chen,Yanhua Dong,Yayan Wu. Amplified fluorescence detection of mercury(II) ions(Hg2+) using target-induced DNAzyme cascade with catalytic and molecular beacons. Analyst, 2012, 137:2799-2805. (IF 5.227)
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[7]Yongxi Zhao*, Lin Qi, Wejun Yang, Shuai Wei, Yaling Wang. Amplified fluorescence detection of Pb2+ using Pb2+-dependent DNAzyme combined with nicking enzyme-mediated enzymatic recycling amplification. Chinese Journal of Analytical Chemistry, 2012,40:1236-1240.(IF 1.193)
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| 2011年以前 | |||
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[6]Graham Milne,Yongxi Zhao, Daniel T. Chiu*. High-precision measurement and analysis of colloidal monolayers.Analytical Chemistry, 2010, 82:3943-3949. (IF 8.008)
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[5]Jason S. Kuo,Yongxi Zhao, Perry G. Schiro, Laiying Ng, David S. W. Lim, J. Patrick Shelby, Daniel T. Chiu*. Deformability considerations in filtration of biological cells. Lab on a Chip, 2010, 10:837-842. (IF 7.517)
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[4]Jason S. Kuo,Yongxi Zhao, Laiying Ng, Gloria S. Yen, Robert M. Lorenz, David S. W. Lim, Daniel T. Chiu*. Microfabricating high-aspect-ration structures in polyurethanse-methacrylate(PUMA) disposable microfluidic devices. Lab on a Chip, 2009, 9:1951-1956. (IF 7.517)
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[3]Yongxi Zhao,Perry G. Schiro,Jason S. Kuo, Laiying Ng, Daniel T. Chiu*. Methold for the accurate preparation of cell-spiking standards. Analytical Chemistry, 2009, 81:1285-1290. (IF 8.008)
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[2]Jason S. Kuo, Laiying Ng, Gloria S. Yen, Robert M. Lorenz, Perry G. Schiro, J. Scott Edgar, Yongxi Zhao, David S. W. Lim, Peter B. Allen, Gavin D. M. Jeffries Daniel T. Chiu*. A new USP class VI-compliant substrate for manufacturing disposable microfluidic devices. Lab on a Chip,2009, 9:870-876. (IF 7.517,Cover Paper)
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[1]Yongxi Zhao, Yu Kong, Bo Wang*, Yayan Wu, Hong Wu. On-line concentration and determination of all-trans- and 13-cis- retinoic acids in rabbit serum by application of sweeping technique in micellar electrokinetic chromatography, Journal of Chromatography A, 2007, 1146:131-135. (IF: 4.601)
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