Zhongyu Li, Xiayue Fan, Zengyi Shang, Lina Zhang, Haotian Zhen, Chaowei Fang, ''Towards Computational Analytics of 3D Neuron Images using Deep Adversarial Learning'', Neurocomputing, 2020 (IF=4.072, Accepted)
 Zhongyu Li, Xiaofan Zhang, Henning Müller, Shaoting Zhang, "Large-scale Retrieval for Medical Image Analytics: A Comprehensive Review", Medical Image Analysis, 2018. (IF=8.880)
 Zhongyu Li, Erik Butler, Kang Li, Aidong Lu, Shuiwang Ji, Shaoting Zhang, "Large-scale Exploration of Neuronal Morphologies using Deep Learning and Augmented Reality", Neuroinformatics, 2018. (IF=5.127)
 Zhongyu Li, Ruogu Fang, Fumin Shen, Amin Katouzian, Shaoting Zhang, "Indexing and Mining Large-Scale Neuron Databases using Maximum Inner Product Search", Pattern Recognition, 2017. (IF=5.898)
 Zhongyu Li, Dimitris N. Metaxas, Aidong Lu, Shaoting Zhang, "Interactive Exploration for Continuously Expanding Neuron Databases", Methods, 2017. (IF=3.782)
 Jihua Zhu, Li Zhu, Zhongyu Li, Chen Li, Jingru Cui, "Automatic Multi-view Registration of Unordered Range Scans without Feature Extraction", Neurocomputing, 2016. (IF=4.072)
 Jihua Zhu, Zhongyu Li, Shaoyi Du, Liang Ma, Te Zhang, "Surface Reconstruction via Efficient and Accurate Registration of Multiview Range Scans", Optical Engineering, 2014. (IF=1.032)
 Jihua Zhu, Deyu Meng, Zhongyu Li, Shaoyi Du, Zejian Yuan, "Robust Registration of Partially Overlapping Point Sets via Genetic Algorithm with Growth Operator", IET Image Processing, 2014. (IF=1.472)
 Bin Kong*, Zhongyu Li*, Shaoting Zhang, "Toward Large-scale Histopathological Image Analysis via Deep Learning", Biomedical Information Technology, 2020. (* indicates equal contribution)
 Peng Liu, Bin Kong, Zhongyu Li, Shaoting Zhang, Ruogu Fang, ''CFEA: Collaborative Feature Ensembling Adaptation for Domain Adaptation in Unsupervised Optic Disc and Cup Segmentation'', International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2019.
 Zhongyu Li, Yixuan Lou, Zhennan Yan, Subhi Al'Aref, James K Min, Leon Axel, Dimitris N. Metaxas, "Fully Automatic Segmentation of Short-axis Cardiac MRI using Modified Deep Layer Aggregation", IEEE International Symposium on Biomedical Imaging (ISBI), 2019.
 Willis Fulmer, Tahir Mahmood, Zhongyu Li, Shaoting Zhang, Jian Huang, Aidong Lu, "ImWeb: Cross-Platform Immersive Web Browsing for Online 3D Neuron Database Exploration", ACM Conference on Intelligence User Interfaces (IUI), 2019.
 Zhongyu Li, Chaowei Fang, Shaoting Zhang, "Deep Feature Representation for the Computational Analytics of 3D Neuronal Morphology", IEEE International Symposium on Biomedical Imaging (ISBI), 2018.
 Bin Kong, Xin Wang, Zhongyu Li, Qi Song, Shaoting Zhang, "Cancer Metastasis Detection via Spatially Structured Deep Network", International Conference on Information Processing in Medical Imaging (IPMI), 2017.
 Zhongyu Li, Fumin Shen, Ruogu Fang, Sailesh Conjeti, Amin Katouzian, Shaoting Zhang, "Maximum Inner Product Search for Morphological Retrieval of Large-Scale Neuron Data", IEEE International Symposium on Biomedical Imaging (ISBI), 2016. oral presentation
 Zhongyu Li, Jihua Zhu, Ke Lan, Chen Li, Chaowei Fang, "Improved Techniques for Multi-view Registration with Motion Averaging", International Conference on 3D Vision (3DV), 2014.